PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462900435
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 142aa    MW: 16397.9 Da    PI: 11.0811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462900435genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161570148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +g+WT  Ed ll ++v+q+G g+W+++ar           ++R++k+c++rw +yl
        462900435 15 KGPWTSLEDRLLTEYVQQHGEGSWNSVARLTDspdrsmtgLRRSGKSCRLRWVNYL 70
                     79****************************************************97 PP

2Myb_DNA-binding23.61.2e-0776115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+  +++++++lG++        +g +R++k+c++rw +yl
        462900435  76 RGKITPDEETVILQLHAMLGNR--------VGRRRSGKSCRLRWVNYL 115
                      8999****************99........9989************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.651470IPR017877Myb-like domain
SMARTSM007171.5E-121472IPR001005SANT/Myb domain
PfamPF002492.5E-141570IPR001005SANT/Myb domain
SuperFamilySSF466893.68E-201697IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-221677IPR009057Homeodomain-like
CDDcd001674.49E-91770No hitNo description
PROSITE profilePS5129417.03571119IPR017930Myb domain
SMARTSM007174.8E-475117IPR001005SANT/Myb domain
PfamPF002496.0E-776115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-1178109IPR009057Homeodomain-like
SuperFamilySSF466892.79E-9101142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-10110142IPR009057Homeodomain-like
PROSITE profilePS512947.513120142IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDSISALMLQ GGWRKGPWTS LEDRLLTEYV QQHGEGSWNS VARLTDSPDR SMTGLRRSGK  60
SCRLRWVNYL RPDLKRGKIT PDEETVILQL HAMLGNRVGR RRSGKSCRLR WVNYLRPDLK  120
RGKITPDEET VILQLHAMLG NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-15151426131MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-15151426131MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604504e-56EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465878.13e-52hypothetical protein SORBIDRAFT_01g047450
SwissprotQ9SSA12e-30MYB57_ARATH; Transcription factor MYB57
TrEMBLM0ZFL93e-52M0ZFL9_HORVD; Uncharacterized protein
TrEMBLC5WYU84e-52C5WYU8_SORBI; Putative uncharacterized protein Sb01g047450
STRINGSb01g047450.11e-51(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-40myb domain protein 305